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Introduction to GROMACS

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Event date
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We will conduct lectures and exercises on GROMACS, an open-source molecular dynamics (MD) calculation software.

Requirements

  • This seminar is held online via Zoom. Attendees need to have the following environments.
    • Internet connection
      • Fixed line is recommended for the stability of the connection.
    • Terminal with mouse and keyboard available(Windows or Mac)
    • Web browser (Chrome is recommended)
  • A Web browser is used to connect to the supercomputer.
  • This seminar is held in Japanese only.

Entire Qualifications

  • We will conduct the drill with a Unix environment, so a minimum knowledge of Unix (shell operations, reading and editing text files) is required.
  • Supercomputer is a candidate for Export Administration Regulations, and taking a lecture is also subject to the Foreign Exchange Control Law regulations and relevant laws. For the details, please check "Rules for Use of Supercomputers for Foreign Nationals and Japanese Nationals Residing Overseas".

"Rules for Use of Supercomputers for Foreign Nationals and Japanese Nationals Residing Overseas"
  http://www.iimc.kyoto-u.ac.jp/en/services/comp/apply/other/gaikokujin.html

Notes

  • The email address you register must be what your organization provides for you. Free or private email addresses are not allowed.
  • We send you a guidance email the day before the seminar, which contains the URLs of the seminar room, texts, and instructions for connecting to the supercomputer. Please make sure to read the email.
DateThursday, July 30, 2026, 1:00 p.m. - 5:00 p.m.
VenueOnline (Zoom)
Participation feesFree
Eligibility for participationFaculty, graduate students, and undergraduate students at academic institutions.
ApplicationRequired
Application Formhttps://forms.gle/9aYxafmht5PE5BG58
Application DeadlinesMonday, July 27, 2026 at 15:00
Capacity15
SponsorResearch Support Division, Center for Information Technology Infrastructure, IIMC 
InquiryResearch Information Section, IT Promotion Division, Information Management Department, Kyoto University 
TEL:075-753-7407
E-mail:comp-info * kudpc.kyoto-u.ac.jp (Replace “*” with “@”.)
Inquiry Form
Program・Fundamentals of Molecular Dynamics (MD) Simulations
・Hands-on Preparation for MD Simulations
・Running Simulations Using GROMACS

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